cutesv

Biostatistics
Genetics

Software Description

Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection


Info

Module Name

cutesv

Last Updated On

08/29/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

https://github.com/tjiangHIT/cuteSV

Documentation

Software Description

Long-read sequencing enables the comprehensive discovery of structural variations (SVs). However, it is still non-trivial to achieve high sensitivity and performance simultaneously due to the complex SV characteristics implied by noisy long reads. cuteSV uses tailored methods to collect the signatures of various types of SVs and employs a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection

General Linux

To load this module for use in a Linux environment, you can run the command:

module load cutesv

Depending on where you are working, there may be more than one version of cutesv available. To see which modules are available for loading you can run:

module avail cutesv

Agate Modules

Default

1.0.10

Other Modules

1.0.10

Mangi Modules

Default

1.0.10

Other Modules

1.0.10

Mesabi Modules

Default

1.0.10

Other Modules

1.0.10