lumpy

Genetics

Software Description

lumpy is a general probabilistic framework for structural variant discovery. LUMPY is designed to consider both paired-end and split-read alignments, and can also consider each independently.


Info

Module Name

lumpy

Last Updated On

08/29/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-6-r84

Documentation

Software Description

lumpy is a general probabilistic framework for structural variant discovery. LUMPY is designed to consider both paired-end and split-read alignments, and can also consider each independently.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load lumpy

Depending on where you are working, there may be more than one version of lumpy available. To see which modules are available for loading you can run:

module avail lumpy

Agate Modules

Default

0.2.11

Other Modules

0.2.11

Mangi Modules

Default

0.2.11

Other Modules

0.2.11

Mesabi Modules

Default

0.2.11

Other Modules

0.2.11