MSI Software

Guidelines and Software Usage Protocol

MSI offers many software packages (listed below) for use by researchers in various fields of research. The MSI Software library below includes descriptions of software packages including many usage examples. 

To access software on Linux systems, please use the module command to load the software into your environment. If you try to run a certain program and get “command not found,” it may be because you need to load the module first. To use the software at MSI, you must first connect to a compute cluster, where you can then load modules and run the software.

Some software titles require a different login than your MSI user account. Please contact the Help Desk if the software you wish to use is password-protected. Depending on licensing, if the software is only available on select MSI machines, additional machines can be requested by contacting the Help Desk.

Software calendars and purchase requests

Title Last Updated On Support Level Software Access Level External Link Software categories
3dtests 29/08/2023 Secondary Support Open Access Animation
abaqus 14/09/2023 Secondary Support Limited Licenses Computer Aided Engineering
abokia-blast 29/08/2023 Secondary Support Open Access Biostatistics | Genetics
abyss 29/08/2023 Secondary Support Open Access Genetics
adam 29/08/2023 Secondary Support Open Access Biostatistics | Genetics
adf 29/08/2023 Secondary Support Open Access Molecular Modeling and Simulation
advisor 29/08/2023 Secondary Support Limited Licenses Debugging and Performance
afni 29/08/2023 Secondary Support Open Access Biomedical Imaging
allpaths-lg 29/08/2023 Secondary Support Open Access Genetics
alphafold 29/08/2023 Secondary Support Open Access Molecular Modeling and Simulation
amber 12/06/2024 Secondary Support Open Access Drug Discovery | Structural Biology | Molecular Modeling and Simulation
amira 29/08/2023 Deprecated Open Access Animation | Computational Geometry | Data Visualization | Image Processing
amos 29/08/2023 Secondary Support Open Access Genetics
ampl 29/08/2023 Deprecated Open Access Comprehensive Math | Optimization
ams 09/07/2024 Secondary Support Open Access Material Science | Drug Discovery | Chemical and Physical Sciences | Electronic Structure | Molecular Modeling and Simulation
anaconda 17/10/2023 Secondary Support Open Access Biomedical Imaging | Optimization | Statistics | Programming Languages | Libraries | Data Visualization | Image Processing
analyze 29/08/2023 Secondary Support Open Access Biomedical Imaging | Animation | Data Visualization | Image Processing
ansys 31/05/2024 Secondary Support Limited Licenses Computer Aided Engineering
ansys-hfss 29/08/2023 Secondary Support Limited Licenses Computer Aided Engineering | Electrical Engineering
ansys-maxwell-3d 29/08/2023 Secondary Support Limited Licenses Computer Aided Engineering | Electrical Engineering
antlr 29/08/2023 Secondary Support Open Access Libraries
ants 03/12/2024 Secondary Support Open Access Biomedical Imaging
armadillo 29/08/2023 Secondary Support Open Access Numerical Libraries
artemis 29/08/2023 Secondary Support Open Access Genetics
aspera-client 29/08/2023 Secondary Support Open Access Utilities
atk 29/08/2023 Secondary Support Open Access Electronic Structure | Molecular Modeling and Simulation
augustus 18/12/2024 Secondary Support Open Access Genetics
autoconf 06/03/2024 Secondary Support Open Access Build Tools
autodock 29/08/2023 Secondary Support Open Access Drug Discovery | Molecular Modeling and Simulation
automake 06/03/2024 Secondary Support Open Access Build Tools
avizo 30/10/2024 Secondary Support Limited Licenses Animation | Computational Geometry | Data Visualization | Image Processing
bamtools 14/11/2023 Primary Support Open Access Genetics
bazel 29/08/2023 Secondary Support Open Access Build Tools
bcftools 29/01/2025 Primary Support Open Access Genetics
beagle 29/08/2023 Secondary Support Open Access Biostatistics | Data Mining
beast 29/08/2023 Secondary Support Open Access Genetics
bedtools 29/08/2023 Primary Support Open Access Genetics
binutils 14/11/2023 Primary Support Open Access Build Tools
bioinformatics 29/08/2023 Secondary Support Open Access Biostatistics | Genetics | Structural Biology | Database
bioperl 29/08/2023 Secondary Support Open Access Biostatistics | Genetics
biopython 14/11/2023 Secondary Support Open Access Biostatistics | Data Mining | Genetics
blasr 29/08/2023 Secondary Support Open Access Genetics
blast 17/03/2025 Secondary Support Open Access Genetics
blast-plus 13/05/2025 Secondary Support Open Access Genetics
blat 29/08/2023 Secondary Support Open Access Genetics
boost 05/03/2024 Primary Support Open Access Libraries
bowtie 23/10/2023 Secondary Support Open Access Genetics
bowtie2 27/01/2025 Primary Support Open Access Genetics
braker1 29/08/2023 Primary Support Open Access Genetics
braker2 29/08/2023 Secondary Support Open Access Genetics