abyss

Genetics

Software Description

1

Info

Module Name

abyss

Last Updated On

08/29/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

http://www.bcgsc.ca/platform/bioinfo/software/abyss

Documentation

Software Description

ABySS is a de novo, parallel, paired-end genomic sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes. To assemble transcriptome data, consider the related program trans-abyss. Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss

General Linux

To load this module for use in a Linux environment, you can run the command:

module load abyss

Depending on where you are working, there may be more than one version of abyss available. To see which modules are available for loading you can run:

module avail abyss

Agate Modules

Default

2.1.5

Other Modules

2.1.5, 1.3.3, 1.3.4, 1.3.6, 1.5.2, 1.9.0, 2.0.2

Mangi Modules

Default

2.1.5

Other Modules

2.1.5, 1.3.3, 1.3.4, 1.3.6, 1.5.2, 1.9.0, 2.0.2

Mesabi Modules

Default

2.1.5

Other Modules

2.1.5, 1.3.3, 1.3.4, 1.3.6, 1.5.2, 1.9.0, 2.0.2