hyphy
Software Description
HyPhy stands for hypothesis testing using phylogenies. It is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It also features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R.
Info
Module Name
hyphy
Last Updated On
09/13/2023
Support Level
Primary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
HyPhy stands for hypothesis testing using phylogenies. It is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It also features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R.
General Linux
To load this module for use in a Linux environment, you can run the command:
module load hyphy
Depending on where you are working, there may be more than one version of hyphy available. To see which modules are available for loading you can run:
module avail hyphy
Agate Modules
Default
2.5.53
Other Modules
2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33
Mangi Modules
Default
2.5.53
Other Modules
2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33
Mesabi Modules
Default
2.5.53
Other Modules
2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33