hyphy

Genetics

Software Description

1

Info

Module Name

hyphy

Last Updated On

09/13/2023

Support Level

Primary Support

Software Access Level

Open Access

Home Page

http://hyphy.org/w/index.php/Main_Page

Documentation

Software Description

HyPhy stands for hypothesis testing using phylogenies. It is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It also features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load hyphy

Depending on where you are working, there may be more than one version of hyphy available. To see which modules are available for loading you can run:

module avail hyphy

Agate Modules

Default

2.5.53

Other Modules

2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33

Mangi Modules

Default

2.5.53

Other Modules

2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33

Mesabi Modules

Default

2.5.53

Other Modules

2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33