soap

Genetics

Software Description

1

Info

Module Name

soap

Last Updated On

08/29/2023

Support Level

Secondary Support

Software Access Level

Open Access

Home Page

http://soap.genomics.org.cn/

Documentation

Software Description

SOAP has been in evolution from a single alignment tool to a tool package that provides full solution to next generation sequencing data analysis. Currently, it consists of a new alignment tool (SOAPaligner/soap2), a re-sequencing consensus sequence builder (SOAPsnp), an indel finder ( SOAPindel ), a structural variation scanner ( SOAPsv ) and a de novo short reads assembler ( SOAPdenovo ).

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.

General Linux

To load this module for use in a Linux environment, you can run the command:

module load soap

Depending on where you are working, there may be more than one version of soap available. To see which modules are available for loading you can run:

module avail soap

Agate Modules

Default

2

Other Modules

2

Mangi Modules

Default

2

Other Modules

2

Mesabi Modules

Default

2

Other Modules

2