velvet
Software Description
Velvet is a software for De Novo Short Read Assembly Using De Bruijn Graphs.It can be used for Solexa and 454 sequencing data assembly.
Info
Module Name
velvet
Last Updated On
08/29/2023
Support Level
Secondary Support
Software Access Level
Open Access
Home Page
Documentation
Software Description
Velvet is a software for De Novo Short Read Assembly Using De Bruijn Graphs.It can be used for Solexa and 454 sequencing data assembly.
General Linux
To load this software in a Linux environment run the command(s):
module load velvet
Package velvet contains two programs:
velveth
and
velvetg
Velveth is the program that creates hash tables that will be used by
velvetg
to assemble the sequences. To run this software run the command(s):
velveth
or
velvetg
Home Page: http://www.ebi.ac.uk/~zerbino/velvet/
Agate Modules
Default
Other Modules
1.2.03, 1.2.08, 1.2.10
Mangi Modules
Default
1.2.10
Other Modules
1.2.03, 1.2.08, 1.2.10
Mesabi Modules
Default
Other Modules
1.2.03, 1.2.08, 1.2.10