Software

MSI provides a wide range of software so you can spend less time on setup and more time on research. Many tools are available as shared, centrally managed installations (modules), while others—especially Python and R packages—are typically installed in your own environment to match the needs of a specific project. This page brings together the essentials for finding and accessing software, understanding modules and compiler stacks, installing packages safely, requesting new or updated software, and resolving common issues such as missing modules or licensing errors. Use the tabs to jump directly to the topic you need.

List of MSI Software


Access and Availability

What software does MSI offer? How do I access it?

Knowledge base

MSI offers many software packages for use by researchers in various fields of research. The MSI Software webpage includes descriptions of software packages including many usage examples.

Modules

What are the default compiler modules?

Knowledge base

MSI regularly updates the default modules for compilers, compilation tools, and commonly used libraries.

What is a module?

Knowledge base

MSI uses software called module to provide users with software-on-demand.

Why are old compiler modules no longer available?

Knowledge base

In order to reduce support overhead and to improve resource utilization efficiency, MSI is decommissioning software modules for compilers and supporting libraries that were released earlier than June,...

Why is [module] no longer available?

Knowledge base

MSI tracks the utilization of the software modules installed on our systems.

How can I create private software modules?

Knowledge base

Software modules are used to manage the software environment on Linux systems, by allowing users to load and unload particular software versions.

Installing Packages

How do I install python packages for use in Jupyter notebooks?

Knowledge base

To use python environments you've created on the command line in a Jupyter notebook, you'll need to create what is known as a 'kernel' for the environment.

How can I install R packages in my home directory?

Knowledge base

You may want to install R libraries that are not provided in MSI's R modules. You can install them to your home directory using the following procedure.

Requests and Updates

I need software MSI does not have. How do I get new software installed at MSI?

Knowledge base

For many software packages, users are advised to install their own software within their home or group directories.

When will MSI install the latest version of the software I want to use?

Knowledge base

MSI software support depends on the software service level.

How do I update my workflow after the software library migration?

Knowledge base

Update any hard-coded references to the old software library paths in your scripts and environment so they point to the new software library locations after the migration..

Licensing

I'm trying to use Matlab or Tecplot and getting a license error. What should I do?

Knowledge base

MATLAB and Tecplot licenses are provided via license servers maintained by University departments outside MSI.

What kind of license will software developed at MSI have?

Knowledge base

MSI engages in software development under the auspices of the Regents of the University of Minnesota.

Why does it say all licenses are in use or there are no available licenses?

Knowledge base

Certain MSI software packages (e.g., COMSOL, & GraphPad Prism) allow a limited number of concurrent license checkouts.

Why has the license for the software I want to use expired?

Knowledge base

MSI attempts to renew all software licenses on schedule to prevent interruptions in service. On occasion, external factors may prevent us from doing so.

Help and Troubleshooting

What are the software service levels?

Knowledge base

Software is classified according to two service levels:Primary SupportSecondary Support.

Every time I try to start a certain software package, I get a message saying that I am not on the include list or not in the right group; how do I fix this?

Knowledge base

Software packages installed on MSI machines must adhere to licensing restrictions set forth by software vendors.

How do I get help using MSI's software? What tutorials are available?

Knowledge base

Consultants and analysts at MSI assist with software questions depending on the service level of the software.

How do I fix an "Untrusted Certificate Error 61" or "Connection Failed Error 1110" when using Citrix Receiver?

Knowledge base

Follow the steps below to fix an "Untrusted Certificate Error 61" or "Connection Failed Error 1110" when using Citrix Receiver. Needing Citrix access? Go to our Help Desk and submit a Citrix ticket.

How do I enable core dumps?

Knowledge base

User core dumps have been re-enabled as of May 5, 2021. A core dump is essentially a snapshot of what was in computer memory when a running program was halted by an interrupt.

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